| Program name | Description | 
|---|
| abiview | Display the trace in an ABI sequencer file | 
| cirdna | Draw circular map of DNA constructs | 
| iep | Calculate the isoelectric point of proteins | 
| lindna | Draw linear maps of DNA constructs | 
| pepinfo | Plot amino acid properties of a protein sequence in parallel | 
| pepnet | Draw a helical net for a protein sequence | 
| pepwheel | Draw a helical wheel diagram for a protein sequence | 
| plotorf | Plot potential open reading frames in a nucleotide sequence | 
| prettyplot | Draw a sequence alignment with pretty formatting | 
| prettyseq | Write a nucleotide sequence and its translation to file | 
| remap | Display restriction enzyme binding sites in a nucleotide sequence | 
| showfeat | Display features of a sequence in pretty format | 
| showpep | Display protein sequences with features in pretty format | 
| sixpack | Display a DNA sequence with 6-frame translation and ORFs | 
| topo | Draw an image of a transmembrane protein |