| Program name | Description | 
|---|---|
| cai | Calculate codon adaptation index | 
| chips | Calculate Nc codon usage statistic | 
| codcmp | Codon usage table comparison | 
| codcopy | Copy and reformat a codon usage table | 
| cusp | Create a codon usage table from nucleotide sequence(s) | 
| syco | Draw synonymous codon usage statistic plot for a nucleotide sequence |