|   | drget | 
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| % drget drcat:uniprot Get data resource entries Data resource output file [uniprot.drcat]: | 
Go to the input files for this example
Go to the output files for this example
| 
Get data resource entries
Version: EMBOSS:6.6.0.0
   Standard (Mandatory) qualifiers:
  [-resources]         resource   Data resource filename and optional format,
                                  or reference (input query)
  [-outfile]           outresource [*.drget] Output data resource file name
   Additional (Optional) qualifiers: (none)
   Advanced (Unprompted) qualifiers: (none)
   Associated qualifiers:
   "-resources" associated qualifiers
   -iformat1           string     Input resource format
   -iquery1            string     Input query fields or ID list
   -ioffset1           integer    Input start position offset
   -idbname1           string     User-provided database name
   "-outfile" associated qualifiers
   -odirectory2        string     Output directory
   -oformat2           string     Data resource output format
   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write first file to standard output
   -filter             boolean    Read first file from standard input, write
                                  first file to standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options and exit. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages
   -version            boolean    Report version number and exit
 | 
| Qualifier | Type | Description | Allowed values | Default | 
|---|---|---|---|---|
| Standard (Mandatory) qualifiers | ||||
| [-resources] (Parameter 1) | resource | Data resource filename and optional format, or reference (input query) | Data resource catalogue entry(s) | |
| [-outfile] (Parameter 2) | outresource | Output data resource file name | Data resource entry | <*>.drget | 
| Additional (Optional) qualifiers | ||||
| (none) | ||||
| Advanced (Unprompted) qualifiers | ||||
| (none) | ||||
| Associated qualifiers | ||||
| "-resources" associated resource qualifiers | ||||
| -iformat1 -iformat_resources | string | Input resource format | Any string | |
| -iquery1 -iquery_resources | string | Input query fields or ID list | Any string | |
| -ioffset1 -ioffset_resources | integer | Input start position offset | Any integer value | 0 | 
| -idbname1 -idbname_resources | string | User-provided database name | Any string | |
| "-outfile" associated outresource qualifiers | ||||
| -odirectory2 -odirectory_outfile | string | Output directory | Any string | |
| -oformat2 -oformat_outfile | string | Data resource output format | Any string | |
| General qualifiers | ||||
| -auto | boolean | Turn off prompts | Boolean value Yes/No | N | 
| -stdout | boolean | Write first file to standard output | Boolean value Yes/No | N | 
| -filter | boolean | Read first file from standard input, write first file to standard output | Boolean value Yes/No | N | 
| -options | boolean | Prompt for standard and additional values | Boolean value Yes/No | N | 
| -debug | boolean | Write debug output to program.dbg | Boolean value Yes/No | N | 
| -verbose | boolean | Report some/full command line options | Boolean value Yes/No | Y | 
| -help | boolean | Report command line options and exit. More information on associated and general qualifiers can be found with -help -verbose | Boolean value Yes/No | N | 
| -warning | boolean | Report warnings | Boolean value Yes/No | Y | 
| -error | boolean | Report errors | Boolean value Yes/No | Y | 
| -fatal | boolean | Report fatal errors | Boolean value Yes/No | Y | 
| -die | boolean | Report dying program messages | Boolean value Yes/No | Y | 
| -version | boolean | Report version number and exit | Boolean value Yes/No | N | 
| ID UniProt IDalt UniProtKB Name Universal protein resource Desc A comprehensive, high-quality and freely accessible resource of protein sequence and functional information. URL http://www.uniprot.org/ Taxon 1 | all EDAMtpc 0639 | Protein sequence analysis EDAMdat 2201 | Sequence record full EDAMid 3021 | UniProt accession EDAMfmt 1929 | FASTA format EDAMfmt 2376 | RDF EDAMfmt 2188 | uniprot EDAMfmt 2331 | HTML EDAMfmt 2332 | XML Xref SP_FT | None Query Sequence record full | HTML | UniProt accession | http://www.uniprot.org/uniprot/%s Query Sequence record full | uniprot | UniProt accession | http://www.uniprot.org/uniprot/%s.txt Query Sequence record full | XML | UniProt accession | http://www.uniprot.org/uniprot/%s.xml Query Sequence record full | RDF | UniProt accession | http://www.uniprot.org/uniprot/%s.rdf Query Sequence record full | FASTA format | UniProt accession | http://www.uniprot.org/uniprot/%s.fasta Example UniProt accession | P12345 | 
The output is a standard EMBOSS resource file.
The results can be output in one of several styles by using the command-line qualifier -oformat xxx, where 'xxx' is replaced by the name of the required format. The available format names are: drcat, basic, wsbasic, list.
See: http://emboss.sf.net/docs/themes/ResourceFormats.html for further information on resource formats.
| ID UniProt IDalt UniProtKB Name Universal protein resource Desc A comprehensive, high-quality and freely accessible resource of protein sequence and functional information. URL http://www.uniprot.org/ Taxon 1 | all EDAMtpc 0639 | Protein sequence analysis EDAMdat 2201 | Sequence record full EDAMid 3021 | UniProt accession EDAMfmt 1929 | FASTA format EDAMfmt 2376 | RDF EDAMfmt 2188 | uniprot EDAMfmt 2331 | HTML EDAMfmt 2332 | XML Xref SP_FT | None Query Sequence record full | HTML | UniProt accession | http://www.uniprot.org/uniprot/%s Query Sequence record full | uniprot | UniProt accession | http://www.uniprot.org/uniprot/%s.txt Query Sequence record full | XML | UniProt accession | http://www.uniprot.org/uniprot/%s.xml Query Sequence record full | RDF | UniProt accession | http://www.uniprot.org/uniprot/%s.rdf Query Sequence record full | FASTA format | UniProt accession | http://www.uniprot.org/uniprot/%s.fasta Example UniProt accession | P12345 | 
| Program name | Description | 
|---|---|
| drfinddata | Find public databases by data type | 
| drfindformat | Find public databases by format | 
| drfindid | Find public databases by identifier | 
| drfindresource | Find public databases by resource | 
| drtext | Get data resource entries complete text | 
Please report all bugs to the EMBOSS bug team (emboss-bug © emboss.open-bio.org) not to the original author.