|   | cachedbfetch | 
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| % cachedbfetch -servername tdbfetch -auto -cachefile ~/.embossdata/qatests.server.tdbfetch Warning: EMBL-Bank : No dbtype found supporting format emblxml-1.0 Warning: EMBL-Bank : No dbtype found supporting format emblxml-1.1 Warning: EMBLCDS : No dbtype found supporting format emblxml-1.1 Warning: EMBLCON : No dbtype found supporting format emblxml-1.0 Warning: EMBLCON : No dbtype found supporting format emblxml-1.1 Warning: EMBLCONEXP : No dbtype found supporting format emblxml-1.0 Warning: EMBLCONEXP : No dbtype found supporting format emblxml-1.1 Warning: Gene Ontology : No dbtype found supporting format oboxml Warning: Gene Ontology : No dbtype found supporting format gordfxml Warning: MEDLINE : No dbtype found supporting format pubmedxml Warning: Patent Equivalents : No dbtype found supporting format patent_equivalents Warning: No dbtype found for db Patent Equivalents Warning: Taxonomy : No dbtype found supporting format emboss_tax Warning: Taxonomy : No dbtype found supporting format ncbi_taxon Warning: UniParc : No dbtype found supporting format uniparcflat | 
Go to the output files for this example
| 
Generate server cache file for Dbfetch/WSDbfetch data sources
Version: EMBOSS:6.6.0.0
   Standard (Mandatory) qualifiers:
  [-servername]        string     [dbfetch] Name of the ws/dbfetch server
                                  defined in EMBOSS resource files (Any
                                  string)
  [-cachefile]         outfile    [server.$(servername)] Server cache output
                                  file
   Additional (Optional) qualifiers:
   -outfile            outfile    [stdout] Output file name
   Advanced (Unprompted) qualifiers: (none)
   Associated qualifiers:
   "-outfile" associated qualifiers
   -odirectory         string     Output directory
   "-cachefile" associated qualifiers
   -odirectory2        string     Output directory
   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write first file to standard output
   -filter             boolean    Read first file from standard input, write
                                  first file to standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options and exit. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages
   -version            boolean    Report version number and exit
 | 
| Qualifier | Type | Description | Allowed values | Default | 
|---|---|---|---|---|
| Standard (Mandatory) qualifiers | ||||
| [-servername] (Parameter 1) | string | Name of the ws/dbfetch server defined in EMBOSS resource files | Any string | dbfetch | 
| [-cachefile] (Parameter 2) | outfile | Server cache output file | Output file | server.$(servername) | 
| Additional (Optional) qualifiers | ||||
| -outfile | outfile | Output file name | Output file | stdout | 
| Advanced (Unprompted) qualifiers | ||||
| (none) | ||||
| Associated qualifiers | ||||
| "-outfile" associated outfile qualifiers | ||||
| -odirectory | string | Output directory | Any string | |
| "-cachefile" associated outfile qualifiers | ||||
| -odirectory2 -odirectory_cachefile | string | Output directory | Any string | |
| General qualifiers | ||||
| -auto | boolean | Turn off prompts | Boolean value Yes/No | N | 
| -stdout | boolean | Write first file to standard output | Boolean value Yes/No | N | 
| -filter | boolean | Read first file from standard input, write first file to standard output | Boolean value Yes/No | N | 
| -options | boolean | Prompt for standard and additional values | Boolean value Yes/No | N | 
| -debug | boolean | Write debug output to program.dbg | Boolean value Yes/No | N | 
| -verbose | boolean | Report some/full command line options | Boolean value Yes/No | Y | 
| -help | boolean | Report command line options and exit. More information on associated and general qualifiers can be found with -help -verbose | Boolean value Yes/No | N | 
| -warning | boolean | Report warnings | Boolean value Yes/No | Y | 
| -error | boolean | Report errors | Boolean value Yes/No | Y | 
| -fatal | boolean | Report fatal errors | Boolean value Yes/No | Y | 
| -die | boolean | Report dying program messages | Boolean value Yes/No | Y | 
| -version | boolean | Report version number and exit | Boolean value Yes/No | N | 
| # qatests.server.tdbfetch 2013-07-15 12:00:00 DBNAME edam [ method: dbfetch hasacc: N format: "obo" edamfmt: "2549 ! OBO" edamdat: "2858 ! Ontology concept" edamtpc: "0091 ! Data handling" type: "text, obo" comment: "EMBRACE Data and Methods (EDAM) Ontology." example: "0338" example: "1929" example: "EDAM_operation:0338" example: "EDAM_format:1929" example: "0000338" example: "0001929" ] ALIAS edam_ontology edam ALIAS EDAM_data edam ALIAS EDAM_format edam ALIAS EDAM_identifier edam ALIAS EDAM_operation edam ALIAS EDAM_topic edam ALIAS MIR:00000189 edam DBNAME embl [ method: dbfetch hasacc: N format: "annot, embl, emblxml-1.2, entrysize, fasta, insdxml, seqxml" edamfmt: "1927 ! EMBL format" edamfmt: "2183 ! EMBLXML" edamfmt: "2330 ! Textual format" edamfmt: "1954 ! Pearson format" edamfmt: "2185 ! insdxml" edamfmt: "2332 ! XML" edamdat: "0855 ! Sequence metadata" edamdat: "2889 ! Sequence record full (nucleic acid)" edamdat: "1255 ! Feature record" edamdat: "2046 ! Sequence record lite (nucleic acid)" edamtpc: "3042 ! Nucleic acid sequences" type: "text, xml, sequence, features" comment: "EMBL Nucleotide Sequence Database, Europe's primary nucleotide sequence resource. The main sources of the DNA and RNA sequences in the database are submissions from individual researchers, genome sequencing projects and patent applications." example: "M10051" example: "K00650" example: "D87894" example: "AJ242600" example: "J00231.1" example: "K00650.1" [Part of this file has been deleted for brevity] DBNAME unisave [ method: dbfetch hasacc: N format: "annot, entrysize, fasta, uniprot" edamfmt: "1963 ! UniProtKB format" edamfmt: "2330 ! Textual format" edamfmt: "1954 ! Pearson format" edamdat: "0855 ! Sequence metadata" edamdat: "1255 ! Feature record" edamdat: "2047 ! Sequence record lite (protein)" edamdat: "2888 ! Sequence record full (protein)" edamtpc: "3043 ! Protein sequences" type: "text, features, sequence" comment: "The UniProtKB Sequence/Annotation Version Archive (UniSave) is a repository of UniProtKB/Swiss-Prot and UniProtKB/TrEMBL entry versions." example: "P06213" example: "P06213.157" example: "P06213.3" example: "INSR_HUMAN" ] ALIAS uniprotkb_sequence_annotation_version_archive unisave ALIAS DRCAT:UniSave unisave DBNAME uspto_prt [ method: dbfetch hasacc: N format: "annot, embl, entrysize, fasta, seqxml" edamfmt: "1927 ! EMBL format" edamfmt: "2330 ! Textual format" edamfmt: "1954 ! Pearson format" edamfmt: "2332 ! XML" edamdat: "0855 ! Sequence metadata" edamdat: "2888 ! Sequence record full (protein)" edamdat: "1255 ! Feature record" edamdat: "2047 ! Sequence record lite (protein)" edamtpc: "3043 ! Protein sequences" type: "text, xml, sequence, features" comment: "Protein sequences appearing in patents from the United States Patent and Trademark Office (USPTO)." example: "AAA00053" example: "I02590" example: "AAA00053.1" ] ALIAS uspto_patent_proteins uspto_prt ALIAS uspto_proteins uspto_prt ALIAS usptoprt uspto_prt ALIAS uspop uspto_prt ALIAS uspo_prt uspto_prt ALIAS uspto uspto_prt | 
| Program name | Description | 
|---|---|
| cachedas | Generate server cache file for DAS servers or for the DAS registry | 
| cacheebeyesearch | Generate server cache file for EB-eye search domains | 
| cacheensembl | Generate server cache file for an Ensembl server | 
| dbtell | Display information about a public database | 
| servertell | Display information about a public server | 
| showdb | Display information on configured databases | 
| showserver | Display information on configured servers | 
Please report all bugs to the EMBOSS bug team (emboss-bug © emboss.open-bio.org) not to the original author.