|   | ALIGNMENT MULTIPLE | 
Multiple sequence alignment
| Program name | Description | 
|---|---|
| edialign | Local multiple alignment of sequences | 
| emma | Multiple sequence alignment (ClustalW wrapper) | 
| infoalign | Display basic information about a multiple sequence alignment | 
| plotcon | Plot conservation of a sequence alignment | 
| prettyplot | Draw a sequence alignment with pretty formatting | 
| showalign | Display a multiple sequence alignment in pretty format | 
| tranalign | Generate an alignment of nucleic coding regions from aligned proteins | 
| eomega | Multiple sequence alignment (ClustalO wrapper) | 
| eomegapp | Profile with profile (ClustalO wrapper) | 
| eomegaps | Single sequence with profile (ClustalO wrapper) | 
| eomegash | Sequence with HMM (ClustalO wrapper) | 
| eomegasp | Sequence with profile (ClustalO wrapper) | 
| mse | Multiple sequence editor |